Initial commit

Makefile

@@ -0,0 +1,68 @@
+SHELL := /bin/sh
+PYTHON := ./.venv/bin/python
+DATA_ROOT ?=
+MASKS_ROOT ?=
+PATHS_CONFIG ?=
+FORCE ?=
+WITH_SUBJECT_FIGURES ?=
+SUBJECT_FIGURE_VARIANTS ?=
+
+RUN_ARGS :=
+
+ifneq ($(strip $(DATA_ROOT)),)
+RUN_ARGS += --data-root "$(DATA_ROOT)"
+endif
+
+ifneq ($(strip $(MASKS_ROOT)),)
+RUN_ARGS += --masks-root "$(MASKS_ROOT)"
+endif
+
+ifneq ($(strip $(PATHS_CONFIG)),)
+RUN_ARGS += --paths-config "$(PATHS_CONFIG)"
+endif
+
+ifneq ($(strip $(FORCE)),)
+RUN_ARGS += --force
+endif
+
+ifneq ($(strip $(WITH_SUBJECT_FIGURES)),)
+RUN_ARGS += --with-subject-figures
+endif
+
+ifneq ($(strip $(SUBJECT_FIGURE_VARIANTS)),)
+RUN_ARGS += --subject-figure-variants $(SUBJECT_FIGURE_VARIANTS)
+endif
+
+.PHONY: foundation h1 h2 h3 h4 h5 all subject-figures test repro-check clean-pyc
+
+foundation:
+	$(PYTHON) scripts/run_foundation.py $(RUN_ARGS)
+
+h1:
+	$(PYTHON) scripts/run_h1_interpretable_features.py
+
+h2:
+	$(PYTHON) scripts/run_h2_mask_effect.py
+
+h3:
+	$(PYTHON) scripts/run_h3_noise_regimes.py
+
+h4:
+	$(PYTHON) scripts/run_h4_aggregation.py
+
+h5:
+	$(PYTHON) scripts/run_h5_deep_vs_handcrafted.py
+
+all:
+	$(PYTHON) scripts/run_all_hypotheses.py $(RUN_ARGS)
+
+subject-figures:
+	$(PYTHON) scripts/run_subject_figures_for_articles.py --variants $(if $(strip $(SUBJECT_FIGURE_VARIANTS)),$(SUBJECT_FIGURE_VARIANTS),5) $(if $(strip $(FORCE)),--overwrite,)
+
+test:
+	$(PYTHON) -m unittest discover -s tests -v
+
+repro-check: all test
+
+clean-pyc:
+	find scripts src tests -type d -name '__pycache__' -prune -exec rm -rf {} +