Initial commit

scripts/run_all_hypotheses.py

@@ -0,0 +1,49 @@
+from __future__ import annotations
+
+import argparse
+from pathlib import Path
+
+from reproducibility_blocks import print_payload, run_all_hypotheses
+
+
+def parse_args() -> argparse.Namespace:
+    parser = argparse.ArgumentParser(description="Run all E01 reproducibility blocks.")
+    parser.add_argument("--data-root", type=Path, default=None, help="Absolute path to the original dataset `data`.")
+    parser.add_argument("--masks-root", type=Path, default=None, help="Absolute path to the masks dataset `data_masks`.")
+    parser.add_argument(
+        "--paths-config",
+        type=Path,
+        default=None,
+        help="Optional JSON config with `data_root` and `masks_root`.",
+    )
+    parser.add_argument(
+        "--force",
+        action="store_true",
+        help="Recompute all reproducibility blocks even if cached outputs already exist.",
+    )
+    parser.add_argument(
+        "--with-subject-figures",
+        action="store_true",
+        help="Render subject-oriented H1-H5 figures after the hypothesis blocks.",
+    )
+    parser.add_argument(
+        "--subject-figure-variants",
+        type=int,
+        default=5,
+        help="Number of candidate subject figures to render per hypothesis.",
+    )
+    return parser.parse_args()
+
+
+if __name__ == "__main__":
+    args = parse_args()
+    print_payload(
+        run_all_hypotheses(
+            data_root=args.data_root,
+            masks_root=args.masks_root,
+            config_path=args.paths_config,
+            force=args.force,
+            with_subject_figures=args.with_subject_figures,
+            subject_figure_variants=args.subject_figure_variants,
+        )
+    )